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| PathWave-package | Performs an enrichment analysis on optimally ordered graphs. |
| PathWave | Performs an enrichment analysis on optimally ordered graphs. |
| pathWave | PathWave analysis tool |
| pwAdjMatrices | PathWave adjacency matrices builder |
| pwKEGGxml | PathWave parser for KEGG XML files |
| pwLPFiles | PathWave input file generator for LP solver |
| pwOptGrids | PathWave result file parser for LP solver |